# Copyright (C) 2020-2022, François-Guillaume Fernandez.
# This program is licensed under the Apache License version 2.
# See LICENSE or go to <https://www.apache.org/licenses/LICENSE-2.0.txt> for full license details.
from typing import Any, Callable, Dict, List, Optional
import torch
import torch.nn as nn
from torch import Tensor
from ...nn.init import init_module
from ..utils import conv_sequence, load_pretrained_params
from .unet import down_path
__all__ = ['UNet3p', 'unet3p']
default_cfgs: Dict[str, Dict[str, Any]] = {
'unet3p': {'arch': 'UNet3p', 'layout': [64, 128, 256, 512, 1024], 'url': None}
}
class FSAggreg(nn.Module):
def __init__(
self,
e_chans: List[int],
skip_chan: int,
d_chans: List[int],
act_layer: Optional[nn.Module] = None,
norm_layer: Optional[Callable[[int], nn.Module]] = None,
drop_layer: Optional[Callable[..., nn.Module]] = None,
conv_layer: Optional[Callable[..., nn.Module]] = None
) -> None:
super().__init__()
# Check stem conv channels
base_chan = e_chans[0] if len(e_chans) > 0 else skip_chan
# Get UNet depth
depth = len(e_chans) + 1 + len(d_chans)
# Downsample = max pooling + conv for channel reduction
self.downsamples = nn.ModuleList([nn.Sequential(nn.MaxPool2d(2 ** (len(e_chans) - idx)),
nn.Conv2d(e_chan, base_chan, 3, padding=1))
for idx, e_chan in enumerate(e_chans)])
self.skip = nn.Conv2d(skip_chan, base_chan, 3, padding=1) if len(e_chans) > 0 else nn.Identity()
# Upsample = bilinear interpolation + conv for channel reduction
self.upsamples = nn.ModuleList([nn.Sequential(nn.Upsample(scale_factor=2 ** (idx + 1),
mode='bilinear', align_corners=True),
nn.Conv2d(d_chan, base_chan, 3, padding=1))
for idx, d_chan in enumerate(d_chans)])
self.block = nn.Sequential(*conv_sequence(depth * base_chan, depth * base_chan,
act_layer, norm_layer, drop_layer, conv_layer,
kernel_size=3, padding=1))
def forward(self, downfeats: List[Tensor], feat: Tensor, upfeats: List[Tensor]):
if len(downfeats) != len(self.downsamples) or len(upfeats) != len(self.upsamples):
raise ValueError(f"Expected {len(self.downsamples)} encoding & {len(self.upsamples)} decoding features, "
f"received: {len(downfeats)} & {len(upfeats)}")
# Concatenate full-scale features
x = torch.cat((*[downsample(downfeat) for downsample, downfeat in zip(self.downsamples, downfeats)],
self.skip(feat),
*[upsample(upfeat) for upsample, upfeat in zip(self.upsamples, upfeats)]), dim=1)
return self.block(x)
class UNet3p(nn.Module):
"""Implements a UNet3+ architecture
Args:
layout: number of channels after each contracting block
in_channels: number of channels in the input tensor
num_classes: number of output classes
act_layer: activation layer
norm_layer: normalization layer
drop_layer: dropout layer
conv_layer: convolutional layer
"""
def __init__(
self,
layout: List[int],
in_channels: int = 3,
num_classes: int = 10,
act_layer: Optional[nn.Module] = None,
norm_layer: Optional[Callable[[int], nn.Module]] = None,
drop_layer: Optional[Callable[..., nn.Module]] = None,
conv_layer: Optional[Callable[..., nn.Module]] = None
) -> None:
super().__init__()
if act_layer is None:
act_layer = nn.ReLU(inplace=True)
if norm_layer is None:
norm_layer = nn.BatchNorm2d
# Contracting path
self.encoder = nn.ModuleList([])
_layout = [in_channels] + layout
_pool = False
for in_chan, out_chan in zip(_layout[:-1], _layout[1:]):
self.encoder.append(down_path(in_chan, out_chan, _pool, 1, act_layer, norm_layer, drop_layer, conv_layer))
_pool = True
# Expansive path
self.decoder = nn.ModuleList([])
for row in range(len(layout) - 1):
self.decoder.append(FSAggreg(
layout[:row],
layout[row],
[len(layout) * layout[0]] * (len(layout) - 2 - row) + layout[-1:],
act_layer, norm_layer, drop_layer, conv_layer
))
# Classifier
self.classifier = nn.Conv2d(len(layout) * layout[0], num_classes, 1)
init_module(self, 'relu')
def forward(self, x: Tensor) -> Tensor:
xs: List[Tensor] = []
# Contracting path
for encoder in self.encoder:
xs.append(encoder(xs[-1] if len(xs) > 0 else x))
# Full-scale expansive path
for idx in range(len(self.decoder) - 1, -1, -1):
xs[idx] = self.decoder[idx](xs[:idx], xs[idx], xs[idx + 1:])
# Classifier
x = self.classifier(xs[0])
return x
def _unet(arch: str, pretrained: bool, progress: bool, **kwargs: Any) -> nn.Module:
# Build the model
model = UNet3p(default_cfgs[arch]['layout'], **kwargs)
# Load pretrained parameters
if pretrained:
load_pretrained_params(model, default_cfgs[arch]['url'], progress)
return model
[docs]
def unet3p(pretrained: bool = False, progress: bool = True, **kwargs: Any) -> UNet3p:
"""UNet3+ from
`"UNet 3+: A Full-Scale Connected UNet For Medical Image Segmentation" <https://arxiv.org/pdf/2004.08790.pdf>`_
.. image:: https://github.com/frgfm/Holocron/releases/download/v0.1.3/unet3p.png
:align: center
Args:
pretrained: If True, returns a model pre-trained on PASCAL VOC2012
progress: If True, displays a progress bar of the download to stderr
Returns:
semantic segmentation model
"""
return _unet('unet3p', pretrained, progress, **kwargs) # type: ignore[return-value]