holocron.trainer

holocron.trainer provides some basic objects for training purposes.

Trainer

Trainer(model: Module, train_loader: DataLoader, val_loader: DataLoader, criterion: Module, optimizer: Optimizer, gpu: int | None = None, output_file: str = './checkpoint.pth', amp: bool = False, skip_nan_loss: bool = False, nan_tolerance: int = 5, gradient_acc: int = 1, gradient_clip: float | None = None, on_epoch_end: Callable[[dict[str, float]], Any] | None = None)

Baseline trainer class.

PARAMETER	DESCRIPTION
model	model to train TYPE: Module
train_loader	training loader TYPE: DataLoader
val_loader	validation loader TYPE: DataLoader
criterion	loss criterion TYPE: Module
optimizer	parameter optimizer TYPE: Optimizer
gpu	index of the GPU to use TYPE: int | None DEFAULT: None
output_file	path where checkpoints will be saved TYPE: str DEFAULT: './checkpoint.pth'
amp	whether to use automatic mixed precision TYPE: bool DEFAULT: False
skip_nan_loss	whether the optimizer step should be skipped when the loss is NaN TYPE: bool DEFAULT: False
nan_tolerance	number of consecutive batches with NaN loss before stopping the training TYPE: int DEFAULT: 5
gradient_acc	number of batches to accumulate the gradient of before performing the update step TYPE: int DEFAULT: 1
gradient_clip	the gradient clip value TYPE: float | None DEFAULT: None
on_epoch_end	callback triggered at the end of an epoch TYPE: Callable[[dict[str, float]], Any] | None DEFAULT: None

Source code in holocron/trainer/core.py

def __init__(
    self,
    model: nn.Module,
    train_loader: DataLoader,
    val_loader: DataLoader,
    criterion: nn.Module,
    optimizer: torch.optim.Optimizer,
    gpu: int | None = None,
    output_file: str = "./checkpoint.pth",
    amp: bool = False,
    skip_nan_loss: bool = False,
    nan_tolerance: int = 5,
    gradient_acc: int = 1,
    gradient_clip: float | None = None,
    on_epoch_end: Callable[[dict[str, float]], Any] | None = None,
) -> None:
    self.model = model
    self.train_loader = train_loader
    self.val_loader = val_loader
    self.criterion = criterion
    self.optimizer = optimizer
    self.amp = amp
    self.scaler: GradScaler
    self.on_epoch_end = on_epoch_end
    self.skip_nan_loss = skip_nan_loss
    self.nan_tolerance = nan_tolerance
    self.gradient_acc = gradient_acc
    self.grad_clip = gradient_clip

    # Output file
    self.output_file = output_file

    # Initialize
    self.step = 0
    self.start_epoch = 0
    self.epoch = 0
    self._grad_count = 0
    self.min_loss = math.inf
    self.gpu = gpu
    self._params: tuple[ParamSeq, ParamSeq] = ([], [])
    self.lr_recorder: list[float] = []
    self.loss_recorder: list[float] = []
    self.set_device(gpu)
    self._reset_opt(self.optimizer.defaults["lr"])

set_device

set_device(gpu: int | None = None) -> None

Move tensor objects to the target GPU

PARAMETER	DESCRIPTION
gpu	index of the target GPU device TYPE: int | None DEFAULT: None

RAISES	DESCRIPTION
AssertionError	if PyTorch cannot access the GPU
ValueError	if the device index is invalid

Source code in holocron/trainer/core.py

def set_device(self, gpu: int | None = None) -> None:
    """Move tensor objects to the target GPU

    Args:
        gpu: index of the target GPU device

    Raises:
        AssertionError: if PyTorch cannot access the GPU
        ValueError: if the device index is invalid
    """
    if isinstance(gpu, int):
        if not torch.cuda.is_available():
            raise AssertionError("PyTorch cannot access your GPU. Please investigate!")
        if gpu >= torch.cuda.device_count():
            raise ValueError("Invalid device index")
        torch.cuda.set_device(gpu)
        self.model = self.model.cuda()
        if isinstance(self.criterion, torch.nn.Module):
            self.criterion = self.criterion.cuda()

to_cuda

to_cuda(x: Tensor, target: Tensor | list[dict[str, Tensor]]) -> tuple[Tensor, Tensor | list[dict[str, Tensor]]]

Move input and target to GPU

PARAMETER	DESCRIPTION
x	input tensor TYPE: Tensor
target	target tensor or list of target dictionaries TYPE: Tensor | list[dict[str, Tensor]]

RETURNS	DESCRIPTION
tuple[Tensor, Tensor | list[dict[str, Tensor]]]	tuple of input and target tensors

RAISES	DESCRIPTION
ValueError	if the device index is invalid

Source code in holocron/trainer/core.py

def to_cuda(
    self, x: Tensor, target: Tensor | list[dict[str, Tensor]]
) -> tuple[Tensor, Tensor | list[dict[str, Tensor]]]:
    """Move input and target to GPU

    Args:
        x: input tensor
        target: target tensor or list of target dictionaries

    Returns:
        tuple of input and target tensors

    Raises:
        ValueError: if the device index is invalid
    """
    if isinstance(self.gpu, int):
        if self.gpu >= torch.cuda.device_count():
            raise ValueError("Invalid device index")
        return self._to_cuda(x, target)  # type: ignore[arg-type]
    return x, target

save

save(output_file: str) -> None

Save a trainer checkpoint

PARAMETER	DESCRIPTION
output_file	destination file path TYPE: str

Source code in holocron/trainer/core.py

def save(self, output_file: str) -> None:
    """Save a trainer checkpoint

    Args:
        output_file: destination file path
    """
    Path(output_file).parent.mkdir(parents=True, exist_ok=True)
    torch.save(
        {
            "epoch": self.epoch,
            "step": self.step,
            "min_loss": self.min_loss,
            "model": self.model.state_dict(),
        },
        output_file,
        _use_new_zipfile_serialization=False,
    )

load

load(state: dict[str, Any]) -> None

Resume from a trainer state

PARAMETER	DESCRIPTION
state	checkpoint dictionary TYPE: dict[str, Any]

Source code in holocron/trainer/core.py

def load(self, state: dict[str, Any]) -> None:
    """Resume from a trainer state

    Args:
        state: checkpoint dictionary
    """
    self.start_epoch = state["epoch"]
    self.epoch = self.start_epoch
    self.step = state["step"]
    self.min_loss = state["min_loss"]
    self.model.load_state_dict(state["model"])

fit_n_epochs

fit_n_epochs(num_epochs: int, lr: float, freeze_until: str | None = None, sched_type: str = 'onecycle', norm_weight_decay: float | None = None, **kwargs: Any) -> None

Train the model for a given number of epochs.

PARAMETER	DESCRIPTION
num_epochs	number of epochs to train TYPE: int
lr	learning rate to be used by the scheduler TYPE: float
freeze_until	last layer to freeze TYPE: str | None DEFAULT: None
sched_type	type of scheduler to use TYPE: str DEFAULT: 'onecycle'
norm_weight_decay	weight decay to apply to normalization parameters TYPE: float | None DEFAULT: None
**kwargs	keyword args passed to the LRScheduler TYPE: Any DEFAULT: {}

Source code in holocron/trainer/core.py

def fit_n_epochs(
    self,
    num_epochs: int,
    lr: float,
    freeze_until: str | None = None,
    sched_type: str = "onecycle",
    norm_weight_decay: float | None = None,
    **kwargs: Any,
) -> None:
    """Train the model for a given number of epochs.

    Args:
        num_epochs: number of epochs to train
        lr: learning rate to be used by the scheduler
        freeze_until: last layer to freeze
        sched_type: type of scheduler to use
        norm_weight_decay: weight decay to apply to normalization parameters
        **kwargs: keyword args passed to the [`LRScheduler`][torch.optim.lr_scheduler.LRScheduler]
    """
    freeze_model(self.model.train(), freeze_until)
    # Update param groups & LR
    self._reset_opt(lr, norm_weight_decay)
    # Scheduler
    self._reset_scheduler(lr, num_epochs, sched_type, **kwargs)

    if self.amp:
        self.scaler = GradScaler("cuda")

    for _ in tqdm(range(num_epochs), desc="Epochs"):
        self._fit_epoch()
        eval_metrics = self.evaluate()

        tqdm.write(f"Epoch {self.epoch}/{self.start_epoch + num_epochs} - {self._eval_metrics_str(eval_metrics)}")

        if eval_metrics["val_loss"] < self.min_loss:
            print(  # noqa: T201
                f"Validation loss decreased {self.min_loss:.4} --> {eval_metrics['val_loss']:.4}: saving state..."
            )
            self.min_loss = eval_metrics["val_loss"]
            self.save(self.output_file)

        if self.on_epoch_end is not None:
            self.on_epoch_end(eval_metrics)

find_lr

find_lr(freeze_until: str | None = None, start_lr: float = 1e-07, end_lr: float = 1, norm_weight_decay: float | None = None, num_it: int = 100) -> None

Gridsearch the optimal learning rate for the training as described in "Cyclical Learning Rates for Training Neural Networks".

PARAMETER	DESCRIPTION
freeze_until	last layer to freeze TYPE: str | None DEFAULT: None
start_lr	initial learning rate TYPE: float DEFAULT: 1e-07
end_lr	final learning rate TYPE: float DEFAULT: 1
norm_weight_decay	weight decay to apply to normalization parameters TYPE: float | None DEFAULT: None
num_it	number of microbatches represented by the sweep; AMP overflow retries may consume more TYPE: int DEFAULT: 100

RAISES	DESCRIPTION
ValueError	if the number of iterations is greater than the number of available batches
RuntimeError	if AMP overflows exhaust the available batches before the sweep completes

Source code in holocron/trainer/core.py

def find_lr(
    self,
    freeze_until: str | None = None,
    start_lr: float = 1e-7,
    end_lr: float = 1,
    norm_weight_decay: float | None = None,
    num_it: int = 100,
) -> None:
    """Gridsearch the optimal learning rate for the training as described in
    ["Cyclical Learning Rates for Training Neural Networks"](https://arxiv.org/pdf/1506.01186.pdf).

    Args:
       freeze_until: last layer to freeze
       start_lr: initial learning rate
       end_lr: final learning rate
       norm_weight_decay: weight decay to apply to normalization parameters
       num_it: number of microbatches represented by the sweep; AMP overflow retries may consume more

    Raises:
        ValueError: if the number of iterations is greater than the number of available batches
        RuntimeError: if AMP overflows exhaust the available batches before the sweep completes
    """
    if num_it > len(self.train_loader):
        raise ValueError("the value of `num_it` needs to be lower than the number of available batches")

    freeze_model(self.model.train(), freeze_until)
    # Update param groups & LR
    self._reset_opt(start_lr, norm_weight_decay)
    num_steps = math.ceil(num_it / self.gradient_acc)
    gamma = (end_lr / start_lr) ** (1 / (num_steps - 1)) if num_steps > 1 else 1
    scheduler = MultiplicativeLR(self.optimizer, lambda step: gamma)

    self.lr_recorder = []
    self.loss_recorder = []

    if self.amp:
        self.scaler = GradScaler("cuda")

    batch_iter = iter(self.train_loader)
    final_step_batches = num_it - self.gradient_acc * (num_steps - 1)
    for step_idx in tqdm(range(num_steps), total=num_steps, desc="Learning rates"):
        step_batches = final_step_batches if step_idx == num_steps - 1 else self.gradient_acc
        stepped = False
        while not stepped:
            accumulated_loss = 0.0
            for batch_idx in range(step_batches):
                try:
                    x, target = next(batch_iter)
                except StopIteration as exc:
                    raise RuntimeError("LR finder ran out of batches while recovering from AMP overflow") from exc
                x, target = self.to_cuda(x, target)

                # Forward
                batch_loss: Tensor = self._get_loss(x, target)  # type: ignore[assignment]
                if torch.isnan(batch_loss) or torch.isinf(batch_loss):
                    if len(self.loss_recorder) == 0:
                        raise ValueError("loss value is NaN or inf.")
                    return

                accumulated_loss += batch_loss.item()
                stepped = self._backprop_step(batch_loss, force=batch_idx == step_batches - 1)

            if stepped:
                self.lr_recorder.append(float(self.optimizer.param_groups[0]["lr"]))
                self.loss_recorder.append(accumulated_loss / step_batches)
                scheduler.step()

plot_recorder

plot_recorder(beta: float = 0.95, **kwargs: Any) -> None

Display the results of the LR grid search

PARAMETER	DESCRIPTION
beta	smoothing factor TYPE: float DEFAULT: 0.95
**kwargs	keyword args of matplotlib.pyplot.show TYPE: Any DEFAULT: {}

RAISES	DESCRIPTION
AssertionError	if the number of learning rate recorder and loss recorder are not the same or if the number of learning rate recorder is 0

Source code in holocron/trainer/core.py

def plot_recorder(self, beta: float = 0.95, **kwargs: Any) -> None:
    """Display the results of the LR grid search

    Args:
        beta: smoothing factor
        **kwargs: keyword args of [`matplotlib.pyplot.show`][matplotlib.pyplot.show]

    Raises:
        AssertionError: if the number of learning rate recorder and loss recorder are not the same or if the number of learning rate recorder is 0
    """
    import matplotlib.pyplot as plt  # noqa: PLC0415

    if len(self.lr_recorder) != len(self.loss_recorder) or len(self.lr_recorder) == 0:
        raise AssertionError("Please run the `lr_find` method first")

    # Exp moving average of loss
    smoothed_losses = []
    avg_loss = 0.0
    for idx, loss in enumerate(self.loss_recorder):
        avg_loss = beta * avg_loss + (1 - beta) * loss
        smoothed_losses.append(avg_loss / (1 - beta ** (idx + 1)))

    plt.plot(self.lr_recorder, smoothed_losses)
    plt.xscale("log")
    plt.xlabel("Learning Rate")
    plt.ylabel("Training loss")
    plt.grid(True, linestyle="--", axis="x")
    plt.show(**kwargs)

check_setup

check_setup(freeze_until: str | None = None, lr: float = 0.0003, norm_weight_decay: float | None = None, num_it: int = 100, **kwargs: Any) -> None

Check whether you can overfit one batch

PARAMETER	DESCRIPTION
freeze_until	last layer to freeze TYPE: str | None DEFAULT: None
lr	learning rate to be used for training TYPE: float DEFAULT: 0.0003
norm_weight_decay	weight decay to apply to normalization parameters TYPE: float | None DEFAULT: None
num_it	number of iterations to perform TYPE: int DEFAULT: 100
**kwargs	keyword args of matplotlib.pyplot.show TYPE: Any DEFAULT: {}

RAISES	DESCRIPTION
ValueError	if the loss value is NaN or inf

Source code in holocron/trainer/core.py

def check_setup(
    self,
    freeze_until: str | None = None,
    lr: float = 3e-4,
    norm_weight_decay: float | None = None,
    num_it: int = 100,
    **kwargs: Any,
) -> None:
    """Check whether you can overfit one batch

    Args:
        freeze_until: last layer to freeze
        lr: learning rate to be used for training
        norm_weight_decay: weight decay to apply to normalization parameters
        num_it: number of iterations to perform
        **kwargs: keyword args of [`matplotlib.pyplot.show`][matplotlib.pyplot.show]

    Raises:
        ValueError: if the loss value is NaN or inf
    """
    import matplotlib.pyplot as plt  # noqa: PLC0415

    freeze_model(self.model.train(), freeze_until)
    # Update param groups & LR
    self._reset_opt(lr, norm_weight_decay)

    x, target = next(iter(self.train_loader))
    x, target = self.to_cuda(x, target)

    losses = []

    if self.amp:
        self.scaler = GradScaler("cuda")

    for idx in range(num_it):
        # Forward
        batch_loss: Tensor = self._get_loss(x, target)  # type: ignore[assignment]
        # Backprop
        self._backprop_step(batch_loss, force=idx + 1 == num_it)

        if torch.isnan(batch_loss) or torch.isinf(batch_loss):
            raise ValueError("loss value is NaN or inf.")

        losses.append(batch_loss.item())

    plt.plot(range(len(losses)), losses)
    plt.xlabel("Optimization steps")
    plt.ylabel("Training loss")
    plt.grid(True, linestyle="--", axis="x")
    plt.show(**kwargs)

Image classification

ClassificationTrainer

ClassificationTrainer(model: Module, train_loader: DataLoader, val_loader: DataLoader, criterion: Module, optimizer: Optimizer, gpu: int | None = None, output_file: str = './checkpoint.pth', amp: bool = False, skip_nan_loss: bool = False, nan_tolerance: int = 5, gradient_acc: int = 1, gradient_clip: float | None = None, on_epoch_end: Callable[[dict[str, float]], Any] | None = None)

Bases: Trainer

Image classification trainer class.

PARAMETER	DESCRIPTION
model	model to train TYPE: Module
train_loader	training loader TYPE: DataLoader
val_loader	validation loader TYPE: DataLoader
criterion	loss criterion TYPE: Module
optimizer	parameter optimizer TYPE: Optimizer
gpu	index of the GPU to use TYPE: int | None DEFAULT: None
output_file	path where checkpoints will be saved TYPE: str DEFAULT: './checkpoint.pth'
amp	whether to use automatic mixed precision TYPE: bool DEFAULT: False
skip_nan_loss	whether the optimizer step should be skipped when the loss is NaN TYPE: bool DEFAULT: False
nan_tolerance	number of consecutive batches with NaN loss before stopping the training TYPE: int DEFAULT: 5
gradient_acc	number of batches to accumulate the gradient of before performing the update step TYPE: int DEFAULT: 1
gradient_clip	the gradient clip value TYPE: float | None DEFAULT: None
on_epoch_end	callback triggered at the end of an epoch TYPE: Callable[[dict[str, float]], Any] | None DEFAULT: None

Source code in holocron/trainer/core.py

def __init__(
    self,
    model: nn.Module,
    train_loader: DataLoader,
    val_loader: DataLoader,
    criterion: nn.Module,
    optimizer: torch.optim.Optimizer,
    gpu: int | None = None,
    output_file: str = "./checkpoint.pth",
    amp: bool = False,
    skip_nan_loss: bool = False,
    nan_tolerance: int = 5,
    gradient_acc: int = 1,
    gradient_clip: float | None = None,
    on_epoch_end: Callable[[dict[str, float]], Any] | None = None,
) -> None:
    self.model = model
    self.train_loader = train_loader
    self.val_loader = val_loader
    self.criterion = criterion
    self.optimizer = optimizer
    self.amp = amp
    self.scaler: GradScaler
    self.on_epoch_end = on_epoch_end
    self.skip_nan_loss = skip_nan_loss
    self.nan_tolerance = nan_tolerance
    self.gradient_acc = gradient_acc
    self.grad_clip = gradient_clip

    # Output file
    self.output_file = output_file

    # Initialize
    self.step = 0
    self.start_epoch = 0
    self.epoch = 0
    self._grad_count = 0
    self.min_loss = math.inf
    self.gpu = gpu
    self._params: tuple[ParamSeq, ParamSeq] = ([], [])
    self.lr_recorder: list[float] = []
    self.loss_recorder: list[float] = []
    self.set_device(gpu)
    self._reset_opt(self.optimizer.defaults["lr"])

evaluate

evaluate() -> dict[str, float]

Evaluate the model on the validation set

RETURNS	DESCRIPTION
dict[str, float]	evaluation metrics (validation loss, top1 accuracy, top5 accuracy)

Source code in holocron/trainer/classification.py

@torch.inference_mode()
def evaluate(self) -> dict[str, float]:
    """Evaluate the model on the validation set

    Returns:
        evaluation metrics (validation loss, top1 accuracy, top5 accuracy)
    """
    self.model.eval()

    val_loss, top1, top5, num_samples, num_valid_batches = 0.0, 0, 0, 0, 0
    for x, target in self.val_loader:
        x, target = self.to_cuda(x, target)

        loss, out = self._get_loss(x, target, return_logits=True)  # ty: ignore[invalid-argument-type]

        # Safeguard for NaN loss
        if not torch.isnan(loss) and not torch.isinf(loss):
            val_loss += loss.item()
            num_valid_batches += 1

        pred = out.topk(5, dim=1)[1] if out.shape[1] >= 5 else out.argmax(dim=1, keepdim=True)
        correct = pred.eq(target.view(-1, 1).expand_as(pred))
        top1 += cast(int, correct[:, 0].sum().item())
        if out.shape[1] >= 5:
            top5 += cast(int, correct.any(dim=1).sum().item())

        num_samples += x.shape[0]

    val_loss /= num_valid_batches

    return {"val_loss": val_loss, "acc1": top1 / num_samples, "acc5": top5 / num_samples}

plot_top_losses

plot_top_losses(mean: tuple[float, float, float], std: tuple[float, float, float], classes: Sequence[str] | None = None, num_samples: int = 12, **kwargs: Any) -> None

Plot the top losses

PARAMETER	DESCRIPTION
mean	mean of the dataset TYPE: tuple[float, float, float]
std	standard deviation of the dataset TYPE: tuple[float, float, float]
classes	list of classes TYPE: Sequence[str] | None DEFAULT: None
num_samples	number of samples to plot TYPE: int DEFAULT: 12
**kwargs	keyword args of matplotlib.pyplot.show TYPE: Any DEFAULT: {}

RAISES	DESCRIPTION
AssertionError	if the argument 'classes' is not specified for multi-class classification

Source code in holocron/trainer/classification.py

@torch.inference_mode()
def plot_top_losses(
    self,
    mean: tuple[float, float, float],
    std: tuple[float, float, float],
    classes: Sequence[str] | None = None,
    num_samples: int = 12,
    **kwargs: Any,
) -> None:
    """Plot the top losses

    Args:
        mean: mean of the dataset
        std: standard deviation of the dataset
        classes: list of classes
        num_samples: number of samples to plot
        **kwargs: keyword args of [`matplotlib.pyplot.show`][matplotlib.pyplot.show]

    Raises:
        AssertionError: if the argument 'classes' is not specified for multi-class classification
    """
    import matplotlib.pyplot as plt  # noqa: PLC0415
    import numpy as np  # noqa: PLC0415

    # Record loss, prob, target, image
    losses = np.zeros(num_samples, dtype=np.float32)
    preds = np.zeros(num_samples, dtype=int)
    probs = np.zeros(num_samples, dtype=np.float32)
    targets = np.zeros(num_samples, dtype=np.float32 if self.is_binary else int)
    images = [None] * num_samples

    # Switch to unreduced loss
    reduction = self.criterion.reduction
    self.criterion.reduction = "none"  # type: ignore[assignment]
    self.model.eval()

    train_iter = iter(self.train_loader)

    for x, target in tqdm(train_iter):
        x, target = self.to_cuda(x, target)

        # Forward
        batch_loss, logits = self._get_loss(x, target, return_logits=True)  # ty: ignore[invalid-argument-type]

        # Binary
        if self.is_binary:
            batch_loss = batch_loss.squeeze(1)
            probs_ = torch.sigmoid(logits.squeeze(1))
        else:
            probs_ = torch.softmax(logits, 1).max(dim=1).values

        if torch.any(batch_loss > losses.min()):
            idcs = np.concatenate((losses, batch_loss.cpu().numpy())).argsort()[-num_samples:]
            kept_idcs = [idx for idx in idcs if idx < num_samples]
            added_idcs = [idx - num_samples for idx in idcs if idx >= num_samples]
            # Update
            losses = np.concatenate((losses[kept_idcs], batch_loss.cpu().numpy()[added_idcs]))
            probs = np.concatenate((probs[kept_idcs], probs_.cpu().numpy()))
            if not self.is_binary:
                preds = np.concatenate((preds[kept_idcs], logits[added_idcs].argmax(dim=1).cpu().numpy()))
            targets = np.concatenate((targets[kept_idcs], target[added_idcs].cpu().numpy()))  # ty: ignore[invalid-argument-type]
            imgs = x[added_idcs].cpu() * torch.tensor(std).view(-1, 1, 1)
            imgs += torch.tensor(mean).view(-1, 1, 1)
            images = [images[idx] for idx in kept_idcs] + [to_pil_image(img) for img in imgs]

    self.criterion.reduction = reduction

    if not self.is_binary and classes is None:
        raise AssertionError("arg 'classes' must be specified for multi-class classification")

    # Final sort
    idcs_ = losses.argsort()[::-1]
    losses, preds, probs, targets = losses[idcs_], preds[idcs_], probs[idcs_], targets[idcs_]
    images = [images[idx] for idx in idcs_]

    # Plot it
    num_cols = 4
    num_rows = math.ceil(num_samples / num_cols)
    _, axes = plt.subplots(num_rows, num_cols, figsize=(20, 5))
    for idx, (img, pred, prob, target, loss) in enumerate(zip(images, preds, probs, targets, losses, strict=True)):
        row = int(idx / num_cols)
        col = idx - num_cols * row
        axes[row][col].imshow(img)
        # Loss, prob, target
        if self.is_binary:
            axes[row][col].title.set_text(f"{loss:.3} / {prob:.2} / {target:.2}")
        # Loss, pred (prob), target
        else:
            axes[row][col].title.set_text(
                f"{loss:.3} / {classes[pred]} ({prob:.1%}) / {classes[target]}"  # type: ignore[index]
            )
        axes[row][col].axis("off")

    plt.show(**kwargs)

BinaryClassificationTrainer

BinaryClassificationTrainer(model: Module, train_loader: DataLoader, val_loader: DataLoader, criterion: Module, optimizer: Optimizer, gpu: int | None = None, output_file: str = './checkpoint.pth', amp: bool = False, skip_nan_loss: bool = False, nan_tolerance: int = 5, gradient_acc: int = 1, gradient_clip: float | None = None, on_epoch_end: Callable[[dict[str, float]], Any] | None = None)

Bases: ClassificationTrainer

Image binary classification trainer class.

PARAMETER	DESCRIPTION
model	model to train TYPE: Module
train_loader	training loader TYPE: DataLoader
val_loader	validation loader TYPE: DataLoader
criterion	loss criterion TYPE: Module
optimizer	parameter optimizer TYPE: Optimizer
gpu	index of the GPU to use TYPE: int | None DEFAULT: None
output_file	path where checkpoints will be saved TYPE: str DEFAULT: './checkpoint.pth'
amp	whether to use automatic mixed precision TYPE: bool DEFAULT: False

Source code in holocron/trainer/core.py

def __init__(
    self,
    model: nn.Module,
    train_loader: DataLoader,
    val_loader: DataLoader,
    criterion: nn.Module,
    optimizer: torch.optim.Optimizer,
    gpu: int | None = None,
    output_file: str = "./checkpoint.pth",
    amp: bool = False,
    skip_nan_loss: bool = False,
    nan_tolerance: int = 5,
    gradient_acc: int = 1,
    gradient_clip: float | None = None,
    on_epoch_end: Callable[[dict[str, float]], Any] | None = None,
) -> None:
    self.model = model
    self.train_loader = train_loader
    self.val_loader = val_loader
    self.criterion = criterion
    self.optimizer = optimizer
    self.amp = amp
    self.scaler: GradScaler
    self.on_epoch_end = on_epoch_end
    self.skip_nan_loss = skip_nan_loss
    self.nan_tolerance = nan_tolerance
    self.gradient_acc = gradient_acc
    self.grad_clip = gradient_clip

    # Output file
    self.output_file = output_file

    # Initialize
    self.step = 0
    self.start_epoch = 0
    self.epoch = 0
    self._grad_count = 0
    self.min_loss = math.inf
    self.gpu = gpu
    self._params: tuple[ParamSeq, ParamSeq] = ([], [])
    self.lr_recorder: list[float] = []
    self.loss_recorder: list[float] = []
    self.set_device(gpu)
    self._reset_opt(self.optimizer.defaults["lr"])

evaluate

evaluate() -> dict[str, float]

Evaluate the model on the validation set

RETURNS	DESCRIPTION
dict[str, float]	evaluation metrics (validation loss, accuracy)

Source code in holocron/trainer/classification.py

@torch.inference_mode()
def evaluate(self) -> dict[str, float]:
    """Evaluate the model on the validation set

    Returns:
        evaluation metrics (validation loss, accuracy)
    """
    self.model.eval()

    val_loss, top1, num_samples, num_valid_batches = 0.0, 0.0, 0, 0
    for x, target in self.val_loader:
        x, target = self.to_cuda(x, target)

        loss, out = self._get_loss(x, target, return_logits=True)  # ty: ignore[invalid-argument-type]

        # Safeguard for NaN loss
        if not torch.isnan(loss) and not torch.isinf(loss):
            val_loss += loss.item()
            num_valid_batches += 1

        top1 += torch.sum((target.view_as(out) >= 0.5) == (torch.sigmoid(out) >= 0.5)).item() / out[0].numel()

        num_samples += x.shape[0]

    val_loss /= num_valid_batches

    return {"val_loss": val_loss, "acc": top1 / num_samples}

Semantic segmentation

SegmentationTrainer

SegmentationTrainer(*args: Any, num_classes: int = 10, **kwargs: Any)

Bases: Trainer

Semantic segmentation trainer class.

PARAMETER	DESCRIPTION
*args	args of Trainer TYPE: Any DEFAULT: ()
num_classes	number of output classes TYPE: int DEFAULT: 10
**kwargs	keyword args of Trainer TYPE: Any DEFAULT: {}

Source code in holocron/trainer/segmentation.py

def __init__(self, *args: Any, num_classes: int = 10, **kwargs: Any) -> None:
    super().__init__(*args, **kwargs)
    self.num_classes = num_classes

evaluate

evaluate(ignore_index: int | None = None) -> dict[str, float]

Evaluate the model on the validation set

PARAMETER	DESCRIPTION
ignore_index	target value to exclude from metrics; defaults to the criterion's ignore_index TYPE: int | None DEFAULT: None

RETURNS	DESCRIPTION
dict[str, float]	evaluation metrics (mean loss per labelled image, global accuracy, mean IoU)

RAISES	DESCRIPTION
ValueError	if validation has no labelled images with a finite loss

Source code in holocron/trainer/segmentation.py

@torch.inference_mode()
def evaluate(self, ignore_index: int | None = None) -> dict[str, float]:
    """Evaluate the model on the validation set

    Args:
        ignore_index: target value to exclude from metrics; defaults to the criterion's ignore_index

    Returns:
        evaluation metrics (mean loss per labelled image, global accuracy, mean IoU)

    Raises:
        ValueError: if validation has no labelled images with a finite loss
    """
    self.model.eval()

    ignore_index = getattr(self.criterion, "ignore_index", 255) if ignore_index is None else ignore_index
    val_loss, num_valid_samples = 0.0, 0
    conf_mat = torch.zeros(
        (self.num_classes, self.num_classes), dtype=torch.int64, device=next(self.model.parameters()).device
    )
    for x, target in self.val_loader:
        x, target = self.to_cuda(x, target)

        loss, out = self._get_loss(x, target, return_logits=True)  # ty: ignore[invalid-argument-type]
        labeled = int((target != getattr(self.criterion, "ignore_index", 255)).flatten(1).any(1).sum())

        # Safeguard for NaN loss
        if torch.isfinite(loss) and labeled:
            val_loss += loss.item() * labeled
            num_valid_samples += labeled

        # borrowed from https://github.com/pytorch/vision/blob/master/references/segmentation/train.py
        pred = out.argmax(dim=1).flatten()
        target = target.flatten()
        k = (target >= 0) & (target < self.num_classes) & (target != ignore_index)
        inds = self.num_classes * target[k].to(torch.int64) + pred[k]
        nc = self.num_classes
        conf_mat += torch.bincount(inds, minlength=nc**2).reshape(nc, nc)

    if num_valid_samples == 0:
        raise ValueError("Validation requires at least one batch with labelled pixels and a finite loss")
    val_loss /= num_valid_samples
    true_positive = torch.diag(conf_mat)
    union = conf_mat.sum(1) + conf_mat.sum(0) - true_positive
    present = union > 0
    acc_global = (true_positive.sum() / conf_mat.sum().clamp_min(1)).item()
    mean_iou = (true_positive[present] / union[present]).mean().item() if present.any() else 0.0

    return {"val_loss": val_loss, "acc_global": acc_global, "mean_iou": mean_iou}

Object detection

DetectionTrainer

DetectionTrainer(model: Module, train_loader: DataLoader, val_loader: DataLoader, criterion: Module, optimizer: Optimizer, gpu: int | None = None, output_file: str = './checkpoint.pth', amp: bool = False, skip_nan_loss: bool = False, nan_tolerance: int = 5, gradient_acc: int = 1, gradient_clip: float | None = None, on_epoch_end: Callable[[dict[str, float]], Any] | None = None)

Bases: Trainer

Object detection trainer class.

PARAMETER	DESCRIPTION
model	model to train TYPE: Module
train_loader	training loader TYPE: DataLoader
val_loader	validation loader TYPE: DataLoader
criterion	loss criterion TYPE: Module
optimizer	parameter optimizer TYPE: Optimizer
gpu	index of the GPU to use TYPE: int | None DEFAULT: None
output_file	path where checkpoints will be saved TYPE: str DEFAULT: './checkpoint.pth'
amp	whether to use automatic mixed precision TYPE: bool DEFAULT: False
skip_nan_loss	whether the optimizer step should be skipped when the loss is NaN TYPE: bool DEFAULT: False
nan_tolerance	number of consecutive batches with NaN loss before stopping the training TYPE: int DEFAULT: 5
gradient_acc	number of batches to accumulate the gradient of before performing the update step TYPE: int DEFAULT: 1
gradient_clip	the gradient clip value TYPE: float | None DEFAULT: None
on_epoch_end	callback triggered at the end of an epoch TYPE: Callable[[dict[str, float]], Any] | None DEFAULT: None

Source code in holocron/trainer/core.py

def __init__(
    self,
    model: nn.Module,
    train_loader: DataLoader,
    val_loader: DataLoader,
    criterion: nn.Module,
    optimizer: torch.optim.Optimizer,
    gpu: int | None = None,
    output_file: str = "./checkpoint.pth",
    amp: bool = False,
    skip_nan_loss: bool = False,
    nan_tolerance: int = 5,
    gradient_acc: int = 1,
    gradient_clip: float | None = None,
    on_epoch_end: Callable[[dict[str, float]], Any] | None = None,
) -> None:
    self.model = model
    self.train_loader = train_loader
    self.val_loader = val_loader
    self.criterion = criterion
    self.optimizer = optimizer
    self.amp = amp
    self.scaler: GradScaler
    self.on_epoch_end = on_epoch_end
    self.skip_nan_loss = skip_nan_loss
    self.nan_tolerance = nan_tolerance
    self.gradient_acc = gradient_acc
    self.grad_clip = gradient_clip

    # Output file
    self.output_file = output_file

    # Initialize
    self.step = 0
    self.start_epoch = 0
    self.epoch = 0
    self._grad_count = 0
    self.min_loss = math.inf
    self.gpu = gpu
    self._params: tuple[ParamSeq, ParamSeq] = ([], [])
    self.lr_recorder: list[float] = []
    self.loss_recorder: list[float] = []
    self.set_device(gpu)
    self._reset_opt(self.optimizer.defaults["lr"])

evaluate

evaluate(iou_threshold: float = 0.5) -> dict[str, float | None]

Evaluate the model on the validation set.

PARAMETER	DESCRIPTION
iou_threshold	IoU threshold for pair assignment TYPE: float DEFAULT: 0.5

RETURNS	DESCRIPTION
dict[str, float | None]	evaluation metrics (validation loss, localization error rate, classification error rate, detection error rate)

Source code in holocron/trainer/detection.py

@torch.inference_mode()
def evaluate(self, iou_threshold: float = 0.5) -> dict[str, float | None]:
    """Evaluate the model on the validation set.

    Args:
        iou_threshold: IoU threshold for pair assignment

    Returns:
        evaluation metrics (validation loss, localization error rate, classification error rate, detection error rate)
    """
    self.model.eval()

    loc_assigns = 0
    correct, clf_error, loc_fn, loc_fp, num_samples = 0, 0, 0, 0, 0

    for x, target in self.val_loader:
        x, target = self.to_cuda(x, target)

        if self.amp:
            with torch.amp.autocast("cuda"):
                detections = self.model(x)
        else:
            detections = self.model(x)

        for dets, t in zip(detections, target, strict=True):
            if t["boxes"].shape[0] > 0 and dets["boxes"].shape[0] > 0:
                gt_indices, pred_indices = assign_iou(t["boxes"], dets["boxes"], iou_threshold)
                loc_assigns += len(gt_indices)
                correct_ = (t["labels"][gt_indices] == dets["labels"][pred_indices]).sum().item()
            else:
                gt_indices, pred_indices = [], []
                correct_ = 0
            correct += correct_
            clf_error += len(gt_indices) - correct_
            loc_fn += t["boxes"].shape[0] - len(gt_indices)
            loc_fp += dets["boxes"].shape[0] - len(pred_indices)
        num_samples += sum(t["boxes"].shape[0] for t in target)

    nb_preds = num_samples - loc_fn + loc_fp
    # Localization
    loc_err = 1 - 2 * loc_assigns / (nb_preds + num_samples) if nb_preds + num_samples > 0 else None
    # Classification
    clf_err = 1 - correct / loc_assigns if loc_assigns > 0 else None
    # End-to-end
    det_err = 1 - 2 * correct / (nb_preds + num_samples) if nb_preds + num_samples > 0 else None
    return {"loc_err": loc_err, "clf_err": clf_err, "det_err": det_err, "val_loss": loc_err}

Miscellaneous

freeze_bn

freeze_bn(mod: Module) -> None

Prevents parameter and stats from updating in Batchnorm layers that are frozen

Example

from holocron.models import rexnet1_0x
from holocron.trainer.utils import freeze_bn
model = rexnet1_0x()
freeze_bn(model)

PARAMETER	DESCRIPTION
mod	model to train TYPE: Module

Source code in holocron/trainer/utils.py

def freeze_bn(mod: nn.Module) -> None:
    """Prevents parameter and stats from updating in Batchnorm layers that are frozen

    Example:
        ```python
        from holocron.models import rexnet1_0x
        from holocron.trainer.utils import freeze_bn
        model = rexnet1_0x()
        freeze_bn(model)
        ```

    Args:
        mod: model to train
    """
    # Loop on modules
    for m in mod.modules():
        if isinstance(m, _BatchNorm) and m.affine and all(not p.requires_grad for p in m.parameters()):
            # Switch back to commented code when https://github.com/pytorch/pytorch/issues/37823 is resolved
            m.track_running_stats = False
            m.eval()

freeze_model

freeze_model(model: Module, last_frozen_layer: str | None = None, frozen_bn_stat_update: bool = False) -> None

Freeze a specific range of model layers.

Example

from holocron.models import rexnet1_0x
from holocron.trainer.utils import freeze_model
model = rexnet1_0x()
freeze_model(model)

PARAMETER	DESCRIPTION
model	model to train TYPE: Module
last_frozen_layer	last layer to freeze. Assumes layers have been registered in forward order TYPE: str | None DEFAULT: None
frozen_bn_stat_update	force stats update in BN layers that are frozen TYPE: bool DEFAULT: False

RAISES	DESCRIPTION
ValueError	if the last frozen layer is not found

Source code in holocron/trainer/utils.py

def freeze_model(
    model: nn.Module,
    last_frozen_layer: str | None = None,
    frozen_bn_stat_update: bool = False,
) -> None:
    """Freeze a specific range of model layers.

    Example:
        ```python
        from holocron.models import rexnet1_0x
        from holocron.trainer.utils import freeze_model
        model = rexnet1_0x()
        freeze_model(model)
        ```

    Args:
        model: model to train
        last_frozen_layer: last layer to freeze. Assumes layers have been registered in forward order
        frozen_bn_stat_update: force stats update in BN layers that are frozen

    Raises:
        ValueError: if the last frozen layer is not found
    """
    # Unfreeze everything
    for p in model.parameters():
        p.requires_grad_(True)

    # Loop on parameters
    if isinstance(last_frozen_layer, str):
        layer_reached = False
        for n, p in model.named_parameters():
            if not layer_reached or n.startswith(last_frozen_layer):
                p.requires_grad_(False)
            if n.startswith(last_frozen_layer):
                layer_reached = True
            # Once the last param of the layer is frozen, we break
            elif layer_reached:
                break
        if not layer_reached:
            raise ValueError(f"Unable to locate child module {last_frozen_layer}")

    # Loop on modules
    if not frozen_bn_stat_update:
        freeze_bn(model)